publications
2023
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Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptidesNature Communications, 2023
2022
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Differentially Optimized Cell-Free Buffer Enables Robust Expression from Unprotected Linear DNA in Exonuclease-Deficient ExtractsACS synthetic biology, 2022
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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineeringNature Communications, 2022
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Cell-Free Protein Synthesis from Exonuclease-Deficient Cellular Extracts Utilizing Linear DNA TemplatesJournal of visualized experiments: JoVE, 2022
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PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H 2 O 2 as Signal IntegratorACS synthetic biology, 2022
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Toehold switch based biosensors for sensing the highly trafficked rosewood Dalbergia maritimaSynthetic and systems biotechnology, 2022
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Cell-Free Biosensors and AI IntegrationMethods in molecular biology (Clifton, NJ), 2022
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A synthetic communication system uncovers extracellular immunity that self-limits bacteriophage transmissionbioRxiv, 2022
2021
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Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructsPloS one, 2021
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Optimising protein synthesis in cell-free systems, a reviewEngineering Biology, 2021
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Reaching Agreement in Competitive Microbial Systems2021
2020
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Engineered RNA-Interacting CRISPR Guide RNAs for Genetic Sensing and DiagnosticsThe CRISPR journal, 2020
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Digital circuit design for biological and silicon computersAdvances in Synthetic Biology, 2020
2019
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Metabolic perceptrons for neural computing in biological systemsNature communications, 2019
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Dynamic colocalization of 2 simultaneously active VSG expression sites within a single expression-site body in Trypanosoma bruceiProceedings of the National Academy of Sciences of the United States of America, 2019
2018
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Quantification of bacterial fluorescence using independent calibrantsPloS one, 2018
2016
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Using RNA as Molecular Code for Programming Cellular FunctionACS synthetic biology, 2016
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Functionalization of an Antisense Small RNAJournal of molecular biology, 2016
2015
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A portable expression resource for engineering cross-species genetic circuits and pathwaysNature communications, 2015
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Identification of the ISWI Chromatin Remodeling Complex of the Early Branching Eukaryote Trypanosoma bruceiThe Journal of biological chemistry, 2015
2014
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Efficient search, mapping, and optimization of multi-protein genetic systems in diverse bacteriaMolecular systems biology, 2014
2011
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TbISWI regulates multiple polymerase I (Pol I)-transcribed loci and is present at Pol II transcription boundaries in Trypanosoma bruceiEukaryotic cell, 2011
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NLP is a novel transcription regulator involved in VSG expression site control in Trypanosoma bruceiNucleic acids research, 2011
2010
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TbISWI and its role in transcriptional control in Trypanosoma bruceiOxford University, UK, 2010
2006
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Computational analysis of Entamoeba histolytica genome-Exploring junk DNA for hidden messagesJAWAHARLAL NEHRU UNIVERSITY NEW DELHI, 2006